Oncotarget

Research Papers:

Endogenous molecular network reveals two mechanisms of heterogeneity within gastric cancer

Site Li _, Xiaomei Zhu, Bingya Liu, Gaowei Wang, Ping Ao

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Oncotarget. 2015; 6:13607-13627. https://doi.org/10.18632/oncotarget.3633

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Abstract

Site Li1, Xiaomei Zhu2, Bingya Liu1,3, Gaowei Wang1, Ping Ao1,4,5

1Shanghai Center for Systems Biomedicine, Ministry of Education Key Laboratory of Systems Biomedicine, Collaborative Innovation Center of Systems Biomedicine, Shanghai Jiao Tong University, Shanghai 200240, China

2GenMath, Seattle, WA 98105, USA

3Shanghai Key Laboratory of Gastric Neoplasms, Shanghai Institute of Digestive Surgery, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China

4State Key Laboratory for Oncogenes and Related Genes, Shanghai Cancer Institute, Shanghai Jiao Tong University School of Medicine, Shanghai 200032, China

5Department of Physics, Shanghai Jiao Tong University, Shanghai 200240, China

Correspondence to:

Ping Ao, e-mail: aoping@sjtu.edu.cn

Keywords: gastric cancer, endogenous molecular network, intratumor heterogeneity, attractor, systems biology

Received: October 9, 2014     Accepted: April 10, 2015     Published: April 24, 2015

ABSTRACT

Intratumor heterogeneity is a common phenomenon and impedes cancer therapy and research. Gastric cancer (GC) cells have generally been classified into two heterogeneous cellular phenotypes, the gastric and intestinal types, yet the mechanisms of maintaining two phenotypes and controlling phenotypic transition are largely unknown. A qualitative systematic framework, the endogenous molecular network hypothesis, has recently been proposed to understand cancer genesis and progression. Here, a minimal network corresponding to such framework was found for GC and was quantified via a stochastic nonlinear dynamical system. We then further extended the framework to address the important question of intratumor heterogeneity quantitatively. The working network characterized main known features of normal gastric epithelial and GC cell phenotypes. Our results demonstrated that four positive feedback loops in the network are critical for GC cell phenotypes. Moreover, two mechanisms that contribute to GC cell heterogeneity were identified: particular positive feedback loops are responsible for the maintenance of intestinal and gastric phenotypes; GC cell progression routes that were revealed by the dynamical behaviors of individual key components are heterogeneous. In this work, we constructed an endogenous molecular network of GC that can be expanded in the future and would broaden the known mechanisms of intratumor heterogeneity.

Author Information

Site Li
Primary Contact  _

Xiaomei Zhu

Bingya Liu

Gaowei Wang

Ping Ao


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